Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Bathy01g04020 | Bathy02g05010 | K8EQ41 | K8F0B2 | Histone H3. | Ubiquitin-like domain-containing protein. | 0.746 |
Bathy01g04020 | Bathy03g04560 | K8EQ41 | K8F334 | Histone H3. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.971 |
Bathy01g04020 | Bathy06g03300 | K8EQ41 | K8EXG3 | Histone H3. | Uncharacterized protein. | 0.855 |
Bathy01g04020 | Bathy08g01930 | K8EQ41 | K8EHK7 | Histone H3. | Ubiquitin. | 0.613 |
Bathy01g04020 | Bathy11g00880 | K8EQ41 | K8EKW6 | Histone H3. | DOT1 domain-containing protein. | 0.720 |
Bathy01g04020 | Bathy15g01410 | K8EQ41 | K8EP62 | Histone H3. | Ubiquitin-like domain-containing protein. | 0.613 |
Bathy02g05010 | Bathy01g04020 | K8F0B2 | K8EQ41 | Ubiquitin-like domain-containing protein. | Histone H3. | 0.746 |
Bathy02g05010 | Bathy03g04550 | K8F0B2 | K8ECR1 | Ubiquitin-like domain-containing protein. | Histone H3; Belongs to the histone H3 family. | 0.746 |
Bathy02g05010 | Bathy03g04560 | K8F0B2 | K8F334 | Ubiquitin-like domain-containing protein. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.935 |
Bathy02g05010 | Bathy04g00190 | K8F0B2 | K8EUY3 | Ubiquitin-like domain-containing protein. | Histone H3; Belongs to the histone H3 family. | 0.746 |
Bathy02g05010 | Bathy08g01930 | K8F0B2 | K8EHK7 | Ubiquitin-like domain-containing protein. | Ubiquitin. | 0.997 |
Bathy02g05010 | Bathy10g00970 | K8F0B2 | K8EJ53 | Ubiquitin-like domain-containing protein. | E3 ubiquitin protein ligase. | 0.636 |
Bathy02g05010 | Bathy11g00880 | K8F0B2 | K8EKW6 | Ubiquitin-like domain-containing protein. | DOT1 domain-containing protein. | 0.696 |
Bathy02g05010 | Bathy15g01410 | K8F0B2 | K8EP62 | Ubiquitin-like domain-containing protein. | Ubiquitin-like domain-containing protein. | 0.997 |
Bathy03g04550 | Bathy02g05010 | K8ECR1 | K8F0B2 | Histone H3; Belongs to the histone H3 family. | Ubiquitin-like domain-containing protein. | 0.746 |
Bathy03g04550 | Bathy03g04560 | K8ECR1 | K8F334 | Histone H3; Belongs to the histone H3 family. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.974 |
Bathy03g04550 | Bathy06g03300 | K8ECR1 | K8EXG3 | Histone H3; Belongs to the histone H3 family. | Uncharacterized protein. | 0.850 |
Bathy03g04550 | Bathy08g01930 | K8ECR1 | K8EHK7 | Histone H3; Belongs to the histone H3 family. | Ubiquitin. | 0.613 |
Bathy03g04550 | Bathy11g00880 | K8ECR1 | K8EKW6 | Histone H3; Belongs to the histone H3 family. | DOT1 domain-containing protein. | 0.720 |
Bathy03g04550 | Bathy15g01410 | K8ECR1 | K8EP62 | Histone H3; Belongs to the histone H3 family. | Ubiquitin-like domain-containing protein. | 0.613 |
page 1 of 4