STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bathy07g01040RNA recognition motif family protein, expressed. (557 aa)    
Predicted Functional Partners:
Bathy09g02910
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
   0.685
Bathy10g03630
CCHC-type domain-containing protein.
    
 0.670
Bathy12g03480
Nuclear cap-binding protein subunit 2.
    
  0.663
Bathy11g03710
Uncharacterized protein.
   
  0.642
Bathy10g01280
SAP domain-containing protein.
   
 0.641
Bathy14g02500
Uncharacterized protein.
   
 
  0.629
Bathy07g04440
Chromo domain-containing protein required for cell polarity.
    
 
 0.581
Bathy03g04270
Splicing factor, arginine/serine-rich 2.
     
 0.575
Bathy02g04240
50S ribosomal protein L27.
   
  0.571
Bathy01g04260
ARID/BRIGHT DNA binding domain protein.
      
 0.560
Your Current Organism:
Bathycoccus prasinos
NCBI taxonomy Id: 41875
Other names: B. prasinos
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.