STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO08928.1PAS domain S-box-containing protein. (149 aa)    
Predicted Functional Partners:
SDO45443.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.966
SDO16600.1
Na+/proline symporter.
  
 0.919
SDP44189.1
Signal transduction histidine kinase.
  
 0.919
SDO39392.1
MHYT domain-containing protein, NO-binding membrane sensor.
   
 0.870
SDP55029.1
Forkhead associated (FHA) domain, binds pSer, pThr, pTyr.
 
 
 0.829
SDO08859.1
Hemoglobin.
 
  
  0.826
SDP56509.1
Nitric oxide dioxygenase.
   
 0.825
SDO36043.1
Multi-sensor hybrid histidine kinase.
 
 0.817
SDP51445.1
Two-component system, cell cycle sensor histidine kinase and response regulator CckA.
 
 0.798
SDO08893.1
5,10-methenyltetrahydrofolate synthetase.
       0.773
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.