STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO09564.1RND family efflux transporter, MFP subunit. (370 aa)    
Predicted Functional Partners:
SDO09533.1
Multidrug efflux pump subunit AcrB.
 
  0.987
SDP14435.1
Outer membrane protein.
  
 0.934
SDP48745.1
Hydrophobic/amphiphilic exporter-1, HAE1 family.
 
  0.882
SDO86114.1
Hydrophobe/amphiphile efflux-1 (HAE1) family protein.
  
  0.871
SDO42339.1
Hydrophobe/amphiphile efflux-1 (HAE1) family protein.
  
  0.839
SDO26638.1
Hydrophobe/amphiphile efflux-1 (HAE1) family protein.
  
  0.829
SDP48679.1
AcrB/AcrD/AcrF family protein.
  
  0.816
SDO62966.1
Multidrug efflux pump.
  
  0.811
SDP48873.1
Multidrug efflux pump subunit AcrB.
  
  0.809
SDO31686.1
Multidrug efflux pump subunit AcrB.
  
  0.804
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.