STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO14620.1H+/gluconate symporter. (484 aa)    
Predicted Functional Partners:
SDO14585.1
NTE family protein.
 
     0.915
SDO14551.1
Uncharacterized membrane protein HdeD, DUF308 family.
       0.598
SDO09564.1
RND family efflux transporter, MFP subunit.
  
     0.595
SDO34876.1
Short-chain fatty acids transporter.
 
   
 0.581
SDP07307.1
Propionate CoA-transferase.
 
     0.481
SDO68685.1
NTE family protein.
 
     0.469
SDO09371.1
Multicomponent Na+:H+ antiporter subunit C.
  
     0.461
SDO09402.1
Multisubunit Na+/H+ antiporter, MnhB subunit.
  
     0.448
SDO14515.1
Hypothetical protein.
       0.439
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.