STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO15011.1DNA-binding transcriptional regulator, LysR family. (311 aa)    
Predicted Functional Partners:
SDO44174.1
DNA-binding transcriptional regulator, LysR family.
  
     0.766
SDO79742.1
LysR family transcriptional regulator, cys regulon transcriptional activator.
  
     0.737
SDO15632.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator.
  
     0.730
SDO45197.1
DNA-binding transcriptional regulator, LysR family.
  
     0.728
SDO89330.1
Transcriptional regulator, LysR family.
  
     0.724
SDO42610.1
DNA-binding transcriptional regulator, LysR family.
  
     0.689
SDO14974.1
Hypothetical protein.
       0.526
SDP38448.1
Transcriptional regulator, LysR family.
  
     0.525
SDO15040.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
       0.482
SDO45443.1
Diguanylate cyclase (GGDEF) domain-containing protein.
      
 0.410
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.