STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO18289.1Cytidylate kinase. (208 aa)    
Predicted Functional Partners:
SDO18331.1
3-phosphoshikimate 1-carboxyvinyltransferase.
 
 
 0.986
SDO76533.1
GTP-binding protein.
  
 0.980
SDO18249.1
SSU ribosomal protein S1P.
 
 
 0.968
SDO05881.1
Prephenate dehydrogenase.
 
 
 0.955
SDO66431.1
Pantoate--beta-alanine ligase.
   
  0.929
SDO72411.1
23S rRNA pseudouridine2605 synthase.
  
 0.917
SDO85021.1
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
      0.907
SDO82904.1
Nucleoside diphosphate kinase.
  
 
 0.895
SDP14923.1
Condensin subunit ScpB.
 
  
 0.847
SDO72975.1
Riboflavin kinase / FMN adenylyltransferase.
 
  
 0.815
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.