STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO26707.1RNA polymerase sigma-70 factor, ECF subfamily. (229 aa)    
Predicted Functional Partners:
SDP67068.1
DNA-directed RNA polymerase subunit beta'.
    
 0.806
SDP67089.1
DNA-directed RNA polymerase subunit beta.
    
 0.765
SDO26737.1
Putative membrane protein.
 
     0.732
SDP12011.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.730
SDP12039.1
Hypothetical protein.
  
 
 0.707
SDO26423.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.672
SDP65483.1
DNA-directed RNA polymerase subunit alpha.
    
 0.671
SDP23468.1
DNA-directed RNA polymerase subunit omega.
    
 0.670
SDO91674.1
Hypothetical protein.
  
 
 0.592
SDO26767.1
Plastocyanin.
 
     0.582
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.