STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO31645.1Global cell cycle regulator GcrA. (188 aa)    
Predicted Functional Partners:
SDP28618.1
RNA polymerase primary sigma factor.
  
 
 
 0.942
SDO75378.1
RNA polymerase sigma-32 factor; Manually curated.
  
 
 
 0.883
SDP55196.1
ATP-dependent RNA helicase SUPV3L1/SUV3.
  
     0.669
SDO40194.1
Protein of unknown function.
  
     0.651
SDO72185.1
Hypothetical protein.
  
     0.649
SDO84382.1
Modification methylase.
  
   
 0.645
SDP55352.1
DnaJ domain-containing protein.
  
   
 0.642
SDO75955.1
Histidine phosphotransferase ChpT.
  
  
  0.621
SDP55299.1
Cobaltochelatase CobT subunit.
  
     0.583
SDO84875.1
F-type H+-transporting ATPase subunit b.
  
     0.575
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.