STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO34508.1Malate thiokinase small subunit. (299 aa)    
Predicted Functional Partners:
SDO34548.1
Malate thiokinase large subunit.
 0.999
SDO39041.1
succinyl-CoA synthetase beta subunit.
 
 0.998
SDP47914.1
succinyl-CoA synthetase beta subunit.
 0.998
SDP54896.1
succinyl-CoA synthetase beta subunit.
 0.997
SDO95258.1
succinyl-CoA synthetase beta subunit.
 0.994
SDO06237.1
Dihydrolipoamide dehydrogenase.
  
 0.980
SDO38936.1
2-oxoglutarate dehydrogenase E1 component.
 
 0.964
SDP25209.1
Citrate synthase.
  
 0.911
SDO79678.1
Fumarase, class II.
  
 0.910
SDO38898.1
2-oxoglutarate dehydrogenase E2 component.
 
 0.904
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.