STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO39083.1Malate dehydrogenase (NAD). (321 aa)    
Predicted Functional Partners:
SDP25209.1
Citrate synthase.
  
 0.991
SDO79678.1
Fumarase, class II.
  
 0.962
SDP51584.1
Isocitrate dehydrogenase (NADP).
  
 
 0.957
SDO01540.1
Glutamate synthase (NADH) large subunit.
  
 
 0.937
SDO39311.1
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
  
 0.932
SDO01190.1
Pyruvate kinase.
  
 0.931
SDP49678.1
Threonine dehydratase.
    
 0.907
SDO06196.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 0.906
SDO17355.1
Phosphoenolpyruvate carboxykinase (ATP).
  
 
 0.894
SDO70398.1
Glyceraldehyde 3-phosphate dehydrogenase.
  
 
 0.890
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.