STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO39951.1Heme exporter protein B. (222 aa)    
Predicted Functional Partners:
SDO39911.1
Heme exporter protein C.
 
 0.999
SDO39983.1
Heme exporter protein A.
 0.999
SDP46225.1
Cytochrome c-type biogenesis protein CcmE.
 
 0.965
SDO39848.1
Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
 
  
 0.920
SDP46258.1
Cytochrome c-type biogenesis protein CcmF.
 
  
 0.874
SDP46292.1
Cytochrome c-type biogenesis protein CcmH.
 
   
 0.843
SDP46192.1
Cytochrome c-type biogenesis protein CcmH.
 
   
 0.779
SDO39879.1
Heme exporter protein D.
       0.581
SDO24678.1
Zinc transport system ATP-binding protein.
  
  
  0.559
SDO40015.1
Aconitate hydratase.
       0.544
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.