STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO41115.1Uroporphyrinogen decarboxylase. (353 aa)    
Predicted Functional Partners:
SDO36900.1
Hydroxymethylbilane synthase; Manually curated.
 0.996
SDO01986.1
Ferrochelatase.
 
  
 0.955
SDP08312.1
Coproporphyrinogen oxidase.
 
 0.916
SDO41156.1
Putative membrane protein.
 
   
 0.896
SDO36942.1
uroporphyrinogen-III synthase.
 
 
 0.860
SDO26234.1
uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
    
 0.854
SDP59754.1
uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
    
 0.854
SDO41192.1
Transcription termination factor Rho.
   
 0.837
SDP13730.1
Porphobilinogen synthase; Manually curated.
 
 
 0.826
SDO19016.1
Urease subunit gamma/beta.
  
    0.803
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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