STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO41228.1Hypothetical protein. (675 aa)    
Predicted Functional Partners:
SDO42158.1
Flagellar hook protein FlgE.
    
   0.839
SDO71282.1
Autotransporter beta-domain-containing protein.
    
   0.839
SDO89008.1
Protein of unknown function.
    
   0.839
SDO93006.1
Chemotaxis protein MotC.
    
   0.839
SDP41313.1
Hypothetical protein.
    
   0.839
SDP56815.1
Hypothetical protein.
    
   0.839
SDO11864.1
Right handed beta helix region.
    
   0.830
SDP17463.1
Undecaprenyl-phosphate glucose phosphotransferase.
    
  0.712
SDO79236.1
Chain length determinant protein.
    
 0.703
SDP17576.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
    
 0.703
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.