STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO43461.1SSU ribosomal protein S6P modification protein. (301 aa)    
Predicted Functional Partners:
SDO43497.1
Uncharacterized conserved protein.
     0.990
SDO43420.1
Hypothetical protein.
     0.950
SDO43378.1
Cupin domain protein.
       0.701
SDP55883.1
Glutaredoxin 3.
    
 0.427
SDO71848.1
Glutamate--cysteine ligase.
    
 0.426
SDO38936.1
2-oxoglutarate dehydrogenase E1 component.
    
 0.421
SDP59821.1
N-acetylglutamate kinase.
    
 0.419
SDP15328.1
Preprotein translocase subunit SecD.
    
 0.417
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.