STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO66344.1Hypothetical protein. (263 aa)    
Predicted Functional Partners:
SDO66309.1
DnaJ domain-containing protein.
     0.949
SDO02982.1
Vanillate O-demethylase ferredoxin subunit.
   
 
  0.573
SDO66386.1
L-proline dehydrogenase.
  
    0.527
SDP18592.1
Cobaltochelatase CobN subunit.
  
 0.503
SDO66431.1
Pantoate--beta-alanine ligase.
       0.474
SDP09812.1
Transcriptional regulator, TetR family.
  
     0.470
SDO66045.1
Predicted branched-chain amino acid permease (azaleucine resistance).
  
     0.468
SDO06666.1
Threonine dehydrogenase.
  
 
 0.451
SDP22524.1
Protein of unknown function.
  
     0.441
SDO66010.1
Hypothetical protein.
  
     0.439
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.