STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO71968.1Protein of unknown function. (82 aa)    
Predicted Functional Partners:
SDP67089.1
DNA-directed RNA polymerase subunit beta.
  
 
   0.850
SDO04672.1
NusA antitermination factor.
   
   0.840
SDP23468.1
DNA-directed RNA polymerase subunit omega.
   
   0.830
SDP67068.1
DNA-directed RNA polymerase subunit beta'.
    
   0.830
SDO94972.1
Bifunctional enzyme CysN/CysC.
    
  0.714
SDP12705.1
Protein of unknown function.
  
     0.629
SDP67212.1
Transcription antitermination protein nusG.
   
 
 0.612
SDO65832.1
Glycerophosphoryl diester phosphodiesterase.
 
  
 0.605
SDP14180.1
NusB antitermination factor.
   
 
 0.601
SDO72006.1
ATP-binding cassette, subfamily B, MsbA.
       0.580
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.