STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO76689.1L,D-transpeptidase catalytic domain. (539 aa)    
Predicted Functional Partners:
SDP22524.1
Protein of unknown function.
  
     0.677
SDO24096.1
Outer membrane immunogenic protein.
  
     0.630
SDO20055.1
Hypothetical protein.
  
     0.622
SDO40423.1
Protein of unknown function.
  
     0.616
SDP45493.1
Hypothetical protein.
  
     0.543
SDP51285.1
Invasion protein IalB, involved in pathogenesis.
  
     0.506
SDO66010.1
Hypothetical protein.
  
     0.496
SDP21937.1
Hypothetical protein.
  
     0.493
SDP44546.1
Hypothetical protein.
  
     0.491
SDO74684.1
Ribonuclease T2.
  
     0.487
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.