STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO81810.1Aspartate aminotransferase. (409 aa)    
Predicted Functional Partners:
SDO08725.1
Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase.
  
  
  0.769
SDO91248.1
Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase.
  
  
  0.731
SDO27681.1
Glycine dehydrogenase.
    
 0.699
SDO91291.1
FAD/FMN-containing dehydrogenase.
  
 
 0.674
SDP49678.1
Threonine dehydratase.
  
 0.674
SDP29236.1
Methionine synthase (B12-dependent); Manually curated.
  
 
  0.650
SDO37467.1
N-methylglutamate dehydrogenase subunit C.
  
 
 0.645
SDO06237.1
Dihydrolipoamide dehydrogenase.
   
 
 0.608
SDP13962.1
Serine hydroxymethyltransferase.
  
 0.583
SDP26943.1
Hypothetical protein.
  
     0.557
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.