STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO88117.1Iron complex outermembrane recepter protein. (743 aa)    
Predicted Functional Partners:
SDO69624.1
Peptidoglycan-associated lipoprotein.
     
 0.721
SDP09083.1
Outer membrane protein OmpA.
     
 0.721
SDP23152.1
Outer membrane protein OmpA.
     
 0.721
SDP59061.1
OmpA family protein.
     
 0.721
SDP59088.1
OmpA family protein.
     
 0.721
SDO16826.1
Protein TonB.
 
 
 0.665
SDO08200.1
Protein TonB.
  
 
 0.621
SDO37868.1
Protein TonB.
  
 
 0.621
SDO69783.1
Colicin import membrane protein.
  
 
 0.621
SDP20216.1
Hypothetical protein.
   
   0.603
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.