STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO88472.1Methylamine dehydrogenase accessory protein MauD. (212 aa)    
Predicted Functional Partners:
SDO88512.1
Methylamine utilisation protein MauE.
 
   
 0.951
SDO88541.1
Methylamine dehydrogenase large subunit.
 
  
 0.947
SDO88437.1
Methylamine dehydrogenase small subunit precursor.
 
     0.932
SDP29236.1
Methionine synthase (B12-dependent); Manually curated.
    
  0.631
SDO88572.1
Cytochrome c biogenesis protein CcdA.
  
  
 0.597
SDO88403.1
Amicyanin apoprotein.
 
    0.591
SDO05602.1
NYN domain-containing protein.
  
     0.588
SDO88330.1
Cytochrome c peroxidase.
 
   
 0.482
SDO88360.1
Hypothetical protein.
     
 0.455
SDO88215.1
Ferredoxin-type protein NapH.
 
   
 0.443
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.