STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO91142.1TRAP-type C4-dicarboxylate transport system, small permease component. (180 aa)    
Predicted Functional Partners:
SDO91199.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
  0.990
SDO91094.1
TRAP transporter, DctM subunit.
 
  0.940
SDO80222.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
 
  0.705
SDO91050.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB.
 
     0.699
SDO80188.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
  
  0.698
SDO91291.1
FAD/FMN-containing dehydrogenase.
 
     0.679
SDO91003.1
Uncharacterized conserved protein GlcG, DUF336 family.
       0.655
SDO91248.1
Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase.
 
     0.581
SDO80133.1
TRAP transporter, DctM subunit.
 
  0.571
SDP50907.1
malonyl-CoA decarboxylase.
 
  0.550
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.