STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP09550.1SAM-dependent methyltransferase, MidA family. (375 aa)    
Predicted Functional Partners:
SDP23763.1
NADH-quinone oxidoreductase subunit I.
  
  
 0.965
SDP21129.1
NADH-quinone oxidoreductase subunit D.
 
 
 0.948
SDP21038.1
NADH dehydrogenase subunit C.
 
 
 0.938
SDP21003.1
NADH dehydrogenase subunit B.
  
 
 0.931
SDP23698.1
NADH dehydrogenase subunit G.
  
 
  0.928
SDP15443.1
Phytoene synthase.
  
  
 0.918
SDO20093.1
NADH dehydrogenase.
  
  
  0.902
SDO95322.1
Formate dehydrogenase.
    
  0.878
SDP09588.1
Prolipoprotein diacylglyceryl transferase.
 
     0.855
SDP20972.1
NADH dehydrogenase subunit A.
  
  
  0.821
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.