STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP15005.1Sec-independent protein translocase protein TatA. (78 aa)    
Predicted Functional Partners:
SDP15042.1
Sec-independent protein translocase protein TatB.
 
 0.999
SDP15083.1
Sec-independent protein translocase protein TatC.
 
 0.999
SDO78092.1
GMP synthase (glutamine-hydrolyzing).
  
    0.966
SDO38138.1
Membrane associated serine protease, rhomboid family.
   
 
 0.875
SDP29588.1
Membrane associated serine protease, rhomboid family.
   
 
 0.875
SDO41518.1
phosphoribosyl-ATP pyrophosphatase.
  
    0.699
SDP14962.1
iron(III) transport system ATP-binding protein.
       0.592
SDO93317.1
Flagellar FliL protein.
    
 
 0.574
SDP15296.1
Protein translocase subunit yajC.
   
 
 0.537
SDP62870.1
TatD DNase family protein.
 
   
 0.519
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.