STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP18425.1Hypothetical protein. (298 aa)    
Predicted Functional Partners:
SDO26837.1
Outer membrane protein (porin).
  
  0.868
SDP51807.1
Hypothetical protein; Partial gene; manually curated.
   
  0.820
SDP61571.1
Hypothetical protein; Partial gene; manually curated.
   
  0.820
SDP62302.1
LPS-assembly protein.
     
 0.820
SDO69624.1
Peptidoglycan-associated lipoprotein.
   
  0.800
SDP09083.1
Outer membrane protein OmpA.
   
  0.800
SDP23152.1
Outer membrane protein OmpA.
   
  0.800
SDP59061.1
OmpA family protein.
   
  0.800
SDP59088.1
OmpA family protein.
   
  0.800
SDO89008.1
Protein of unknown function.
  
 
  0.789
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.