STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP19263.1MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR. (151 aa)    
Predicted Functional Partners:
SDO01540.1
Glutamate synthase (NADH) large subunit.
     
 0.893
SDO11933.1
DNA polymerase-3 subunit gamma/tau.
    
  0.869
SDP67089.1
DNA-directed RNA polymerase subunit beta.
    
 
 0.857
SDP62921.1
DNA polymerase-3 subunit delta'.
    
  0.837
SDO45443.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.819
SDP65483.1
DNA-directed RNA polymerase subunit alpha.
    
 
 0.816
SDP23468.1
DNA-directed RNA polymerase subunit omega.
    
   0.813
SDP67068.1
DNA-directed RNA polymerase subunit beta'.
    
   0.813
SDO17965.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.755
SDP55029.1
Forkhead associated (FHA) domain, binds pSer, pThr, pTyr.
    
 0.666
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.