STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP29915.1preQ(0) biosynthesis protein QueD. (128 aa)    
Predicted Functional Partners:
SDP29944.1
7-carboxy-7-deazaguanine synthase, Cx14CxxC type.
 
 
 0.995
SDP29887.1
7-cyano-7-deazaguanine reductase.
 
  
 0.963
SDP29996.1
preQ(0) biosynthesis protein QueC.
 
  
 0.957
SDO11156.1
GTP cyclohydrolase I.
  
 
 0.897
SDO26802.1
GTP cyclohydrolase I.
  
 
 0.897
SDO66513.1
NTE family protein.
    
  0.661
SDO78092.1
GMP synthase (glutamine-hydrolyzing).
     
 0.488
SDP29971.1
Hypothetical protein.
       0.482
SDP29858.1
Hypothetical protein.
       0.452
SDO37991.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG.
    
  0.441
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.