STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP38076.1DNA-binding transcriptional regulator, LysR family. (301 aa)    
Predicted Functional Partners:
SDP38132.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.776
SDP38103.1
SnoaL-like domain-containing protein.
 
     0.758
SDO18628.1
DNA-binding transcriptional regulator, LysR family.
  
     0.682
SDO00963.1
LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator.
  
     0.657
SDO19464.1
DNA-binding transcriptional regulator, LysR family.
  
     0.610
SDO75605.1
DNA-binding transcriptional regulator, LysR family.
  
     0.557
SDO89330.1
Transcriptional regulator, LysR family.
  
     0.554
SDO27575.1
DNA-binding transcriptional regulator, LysR family.
  
     0.517
SDO37599.1
DNA-binding transcriptional regulator, LysR family.
  
     0.513
SDP06591.1
DNA-binding transcriptional regulator, LysR family.
  
     0.508
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.