STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP38976.1PRC-barrel domain-containing protein. (233 aa)    
Predicted Functional Partners:
SDO75878.1
Hypothetical protein.
 
     0.733
SDP26234.1
Apolipoprotein A1/A4/E domain-containing protein.
  
     0.705
SDO36982.1
Hypothetical protein.
  
     0.690
SDP26909.1
Hypothetical protein.
  
     0.678
SDP26943.1
Hypothetical protein.
  
     0.672
SDP22524.1
Protein of unknown function.
  
     0.671
SDO67286.1
AsmA-like C-terminal region.
  
     0.670
SDP14597.1
Hypothetical protein.
  
     0.670
SDP62326.1
Periplasmic chaperone for outer membrane proteins SurA.
  
     0.669
SDO05602.1
NYN domain-containing protein.
  
     0.656
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.