STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP42507.1Alcohol dehydrogenase (cytochrome c). (599 aa)    
Predicted Functional Partners:
SDP47535.1
Methanol dehydrogenase (cytochrome) small subunit.
 
 
 0.980
SDP42562.1
Quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein.
 
 
 0.914
SDP42532.1
C-type cytochrome, methanol metabolism-related.
 
 
 0.899
SDP47476.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
 
 0.898
SDP47728.1
mxaD protein.
  
  
  0.887
SDP42453.1
Sulfur-oxidizing protein SoxY.
 
  
  0.831
SDP42601.1
PQQ-dependent catabolism-associated CXXCW motif protein.
 
   
 0.826
SDP42334.1
Polyketide cyclase / dehydrase and lipid transport.
  
  
  0.824
SDP42479.1
Quinoprotein relay system zinc metallohydrolase 2.
 
     0.819
SDP42723.1
PQQ-dependent catabolism-associated beta-propeller protein.
 
 
  0.815
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.