STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP48294.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (406 aa)    
Predicted Functional Partners:
SDP48319.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.925
SDP48344.1
C4-dicarboxylate transporter, DctM subunit.
 
 
  0.867
SDP47869.1
Sulfoacetaldehyde acetyltransferase.
  
     0.646
SDP48374.1
Choline dehydrogenase.
 
     0.550
SDO19756.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.492
SDP48261.1
Transcriptional regulator, IclR family.
  
     0.486
SDO91142.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
 
  0.449
SDO80188.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
 0.446
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.