STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP59527.1Outer membrane lipoprotein-sorting protein. (234 aa)    
Predicted Functional Partners:
SDO08624.1
Putative ABC transport system ATP-binding protein.
 
 
 
 0.840
SDO74896.1
Hypothetical protein.
    
   0.830
SDO75289.1
N-acetylmuramoyl-L-alanine amidase.
    
   0.830
SDO77000.1
N-acetylmuramoyl-L-alanine amidase.
    
   0.830
SDP24173.1
Lipoprotein-releasing system permease protein.
 
 
 
 0.824
SDO86227.1
Putative ABC transport system ATP-binding protein.
   
 
 0.819
SDP24264.1
Lipoprotein-releasing system ATP-binding protein.
   
 
 0.819
SDP44064.1
Putative ABC transport system ATP-binding protein.
   
 
 0.819
SDP50612.1
Putative ABC transport system ATP-binding protein.
   
 
 0.819
SDO86258.1
Putative ABC transport system permease protein.
 
 
 
 0.812
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.