STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP62771.1Membrane protein required for colicin V production. (199 aa)    
Predicted Functional Partners:
SDP62793.1
Amidophosphoribosyltransferase.
  
  
 0.940
SDP27382.1
Phosphoribosylaminoimidazole-succinocarboxamide synthase.
  
    0.862
SDO82665.1
Phosphoribosylformylglycinamidine cyclo-ligase.
   
    0.841
SDO74375.1
5-(carboxyamino)imidazole ribonucleotide mutase.
   
    0.815
SDP27308.1
Phosphoribosylformylglycinamidine synthase.
   
    0.803
SDP27233.1
Phosphoribosylformylglycinamidine synthase subunit II.
   
    0.779
SDP62718.1
Alanine racemase.
  
    0.663
SDP62694.1
Replicative DNA helicase.
       0.660
SDP62750.1
DNA replication and repair protein RadA.
       0.660
SDO70306.1
Cell division protein ZapA.
  
  
 0.629
Your Current Organism:
Filomicrobium insigne
NCBI taxonomy Id: 418854
Other names: CGMCC 1.6497, F. insigne, Filomicrobium insigne Wu et al. 2009, Hyphomicrobium sp. SLG5B-19, LMG 23927, LMG:23927, strain SLG5B-19
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