STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB82132.1Peptidase family M13; KEGG: pmz:HMPREF0659_A6591 3.6e-282 peptidase family M13 K07386. (677 aa)    
Predicted Functional Partners:
KXB82131.1
KEGG: ccm:Ccan_15020 1.0e-174 ABC transporter ATP-binding protein ydiF K06158; Psort location: Cytoplasmic, score: 9.97.
       0.758
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
      0.623
KXB79133.1
Peptidase, M24 family; KEGG: pdn:HMPREF9137_1440 2.9e-209 peptidase, M24 family K01262; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.558
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.536
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
   
    0.520
KXB78298.1
KEGG: spe:Spro_1881 4.5e-39 amino acid/peptide transporter K03305; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.482
KXB77501.1
KEGG: pmz:HMPREF0659_A6751 0. peptidase, S9A/B/C family, catalytic domain protein K01278; Psort location: Cytoplasmic, score: 8.96.
  
     0.435
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
 
  
 0.433
KXB74250.1
KEGG: pmz:HMPREF0659_A6994 0. peptidase, S9A/B/C family, catalytic domain protein.
  
     0.413
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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