STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (363 aa)    
Predicted Functional Partners:
fcl
NAD dependent epimerase/dehydratase family protein; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 0.998
KXB78796.1
KEGG: pru:PRU_1376 5.1e-141 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; K00971 mannose-1-phosphate guanylyltransferase.
 
 
 0.853
KXB81954.1
KEGG: pmz:HMPREF0659_A6869 4.2e-281 putative Prolyl endopeptidase; K01322 prolyl oligopeptidase; Psort location: Periplasmic, score: 9.76.
       0.791
KXB81953.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96; Belongs to the UPF0246 family.
       0.790
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
 
      0.723
KXB78766.1
Putative epimerase/dehydratase WbiI; KEGG: ccm:Ccan_23400 9.9e-122 capsular polysaccharide biosynthesis protein capD; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.689
KXB80119.1
Thioredoxin; KEGG: cla:Cla_1412 1.0e-25 trx; thioredoxin K03671; Psort location: Cytoplasmic, score: 9.26; Belongs to the thioredoxin family.
    
   0.683
KXB77788.1
KEGG: pmz:HMPREF0659_A5895 3.3e-75 bacterial sugar transferase; Psort location: CytoplasmicMembrane, score: 7.88.
  
  
 0.678
KXB75702.1
NAD dependent epimerase/dehydratase family protein; KEGG: sgo:SGO_2016 1.7e-71 nucleotide sugar dehydratase K01710; Psort location: Cytoplasmic, score: 9.26.
 
 0.639
KXB77800.1
Chain length determinant protein; KEGG: bsa:Bacsa_0238 4.6e-156 capsular exopolysaccharide family protein; Psort location: CytoplasmicMembrane, score: 9.82.
  
  
 0.634
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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