STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB81975.1KEGG: rlt:Rleg2_4805 5.6e-36 MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 10.00. (456 aa)    
Predicted Functional Partners:
KXB81974.1
Hypothetical protein; KEGG: ere:EUBREC_1730 3.3e-34 cytidylate kinase; K00945 cytidylate kinase; Psort location: Cytoplasmic, score: 8.96.
     0.860
KXB81973.1
KEGG: pdn:HMPREF9137_1300 1.4e-184 rffG; dTDP-glucose 4,6-dehydratase K01710; Psort location: Cytoplasmic, score: 8.96; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
       0.727
KXB81976.1
KEGG: pmz:HMPREF0659_A5831 2.4e-127 xseA; exodeoxyribonuclease VII, large subunit K03601; Psort location: Cytoplasmic, score: 9.97; Belongs to the XseA family.
     
 0.700
xseB
Putative exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
    0.695
purT
Phosphoribosylglycinamide formyltransferase 2; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.
       0.623
KXB78009.1
KEGG: pit:PIN17_A1294 9.4e-165 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134; Psort location: Cytoplasmic, score: 9.97.
   
  
 0.508
KXB77642.1
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
    0.501
KXB81978.1
ComEC/Rec2-like protein; KEGG: apb:SAR116_0501 8.6e-19 DNA uptake protein ComEC K02238; Psort location: CytoplasmicMembrane, score: 10.00.
       0.430
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.410
KXB81980.1
Putative membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.402
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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