Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB81368.1Hypothetical protein; Psort location: OuterMembrane, score: 9.52. (508 aa)    
Predicted Functional Partners:
KXB74186.1
Hypothetical protein.
 
 
   0.853
KXB74390.1
KEGG: cyb:CYB_1515 0.0010 TPR repeat-containing protein kinase; K08884 serine/threonine protein kinase, bacterial.
  
     0.752
KXB80098.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.86.
  
     0.751
KXB80394.1
PAP2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.738
KXB81961.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.721
KXB74293.1
Outer membrane protein, OMP85 family.
  
 
 
 0.718
KXB79959.1
Hypothetical protein; KEGG: pdn:HMPREF9137_0079 1.2e-299 hypothetical protein; K03770 peptidyl-prolyl cis-trans isomerase D; Psort location: OuterMembrane, score: 9.49.
 
     0.703
KXB78964.1
BNR/Asp-box repeat protein.
  
 
   0.689
KXB80145.1
Outer membrane assembly lipoprotein YfiO.
   
 
 0.684
KXB79013.1
Hypothetical protein.
    
   0.671
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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