Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB81318.1Hypothetical protein; Psort location: OuterMembrane, score: 9.49. (766 aa)    
Predicted Functional Partners:
KXB81319.1
Hypothetical protein.
       0.509
KXB74751.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.496
KXB76628.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.494
KXB80132.1
TonB-dependent receptor; KEGG: hip:CGSHiEE_01810 2.4e-07 bcp; TonB K03832; Psort location: Periplasmic, score: 9.83.
  
   0.486
KXB77302.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.485
KXB78993.1
TonB-dependent receptor.
  
   0.470
KXB80395.1
TonB-dependent receptor plug domain protein; Psort location: OuterMembrane, score: 9.49.
  
  
  0.444
KXB76629.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.442
KXB81317.1
Hypothetical protein.
       0.434
KXB78132.1
Hypothetical protein.
    
   0.433
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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