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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80830.1KEGG: efc:EFAU004_02559 5.4e-114 alpha-1,2-mannosidase. (757 aa)    
Predicted Functional Partners:
KXB79019.1
Hypothetical protein.
     0.591
KXB80829.1
Hypothetical protein.
       0.542
KXB80831.1
Phospholipase, patatin family; KEGG: ssr:SALIVB_1087 3.3e-59 serine protease.
       0.479
KXB79602.1
Glycosyl hydrolase family 20, catalytic domain protein; KEGG: pmz:HMPREF0659_A6443 1.7e-206 beta-L-N-acetylhexosaminidase family protein; K12373 hexosaminidase; Psort location: Periplasmic, score: 9.76.
 
     0.410
KXB78468.1
Hypothetical protein; KEGG: pmz:HMPREF0659_A6969 9.2e-174 F5/8 type C domain protein; K01206 alpha-L-fucosidase.
 
     0.410
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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