Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB80602.1KEGG: pmz:HMPREF0659_A6874 1.1e-83 prmA; ribosomal protein L11 methyltransferase K02687; Psort location: Cytoplasmic, score: 9.97. (289 aa)    
Predicted Functional Partners:
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
 
 0.859
KXB78282.1
RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
 
  
 0.677
KXB80601.1
Hypothetical protein; KEGG: dwi:Dwil_GK17880 0.00077 GK17880 gene product from transcript GK17880-RA; K14165 dual specificity phosphatase.
       0.632
KXB79948.1
NOL1/NOP2/sun family protein; KEGG: lbh:Lbuc_1064 1.4e-44 RNA methylase; Psort location: Cytoplasmic, score: 9.26.
  
  
 0.618
KXB74245.1
DnaJ domain protein; KEGG: tgo:TGME49_017710 0.0041 DnaJ domain-containing protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.572
KXB81952.1
DnaJ domain protein; KEGG: apb:SAR116_1614 9.3e-27 DnaJ family molecular chaperone K03686; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.563
dnaJ
Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]
  
  
 0.563
KXB80600.1
Hypothetical protein; KEGG: pyo:PY00139 0.00064 erythrocyte membrane protein; K09561 STIP1 homology and U-box containing protein 1; Psort location: OuterMembrane, score: 9.49.
       0.525
mutS2
MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
 
     0.451
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
    0.450
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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