STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80379.1Sigma-70 region 2; KEGG: mtu:Rv0182c 3.1e-12 sigG; RNA polymerase factor sigma-70 K03088; Psort location: Cytoplasmic, score: 9.26; Belongs to the sigma-70 factor family. ECF subfamily. (160 aa)    
Predicted Functional Partners:
KXB80378.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.813
KXB77368.1
Sigma-70 region 2; KEGG: acl:ACL_0425 4.7e-11 ECF subfamily RNA polymerase sigma-70 factor K03088; Psort location: Cytoplasmic, score: 9.94.
  
     0.770
KXB75711.1
Sigma-70 region 2; KEGG: ccm:Ccan_05890 5.3e-20 putative RNA polymerase sigma factor rfaY K03088; Psort location: Cytoplasmic, score: 9.26; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.767
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.746
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.701
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.700
KXB80146.1
Hypothetical protein.
    
 
 0.698
KXB81742.1
Sigma-70 region 2; KEGG: ccm:Ccan_05890 1.2e-15 putative RNA polymerase sigma factor rfaY K03088; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.682
KXB81738.1
Hypothetical protein; KEGG: pmz:HMPREF0659_A5050 2.1e-103 hypothetical protein; K08884 serine/threonine protein kinase, bacterial; Psort location: Cytoplasmic, score: 8.96.
 
 
 
 0.474
leuS
leucine--tRNA ligase; KEGG: pmz:HMPREF0659_A5028 0. leuS; leucine--tRNA ligase K01869; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.447
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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