STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80383.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (200 aa)    
Predicted Functional Partners:
KXB80388.1
Heptosyltransferase; KEGG: gfo:GFO_3278 1.0e-57 RfaQ-like lipopolysaccharide core biosynthesis glycosyl transferase K01043; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.861
KXB74994.1
KEGG: pdn:HMPREF9137_1209 0. glycosyltransferase group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.531
KXB77792.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.452
KXB81383.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.86.
  
     0.443
KXB79941.1
Signal peptide protein, YSIRK family; Psort location: CytoplasmicMembrane, score: 9.82.
  
     0.420
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
    0.413
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
       0.404
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.