STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80426.1Putative collagenase; KEGG: pmz:HMPREF0659_A6397 3.2e-187 peptidase, U32 family K08303; Psort location: Cytoplasmic, score: 8.96. (418 aa)    
Predicted Functional Partners:
KXB80427.1
Fe-S metabolism associated domain protein; KEGG: vvu:VV1_1803 9.3e-23 csdE; cysteine desulfurase K02426; Psort location: Cytoplasmic, score: 9.26.
       0.830
KXB80428.1
RNA methyltransferase, TrmH family; KEGG: ccm:Ccan_04200 2.8e-46 23S rRNA Gm2251 2'-O-methyltransferase; Psort location: Cytoplasmic, score: 8.96.
       0.818
cysS
cysteine--tRNA ligase; KEGG: pmz:HMPREF0659_A6358 2.3e-239 cysS; cysteine--tRNA ligase K01883; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.600
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
  
    0.571
KXB81364.1
Hypothetical protein.
  
  
 0.528
KXB79905.1
O-methyltransferase; KEGG: pmz:HMPREF0659_A6336 2.4e-86 O-methyltransferase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.528
KXB80424.1
KEGG: pmz:HMPREF0659_A6394 1.8e-280 putative Lipid A export ATP-binding/permease protein MsbA; K11085 ATP-binding cassette, subfamily B, bacterial MsbA; Psort location: CytoplasmicMembrane, score: 10.00.
       0.419
KXB80391.1
Peptidase C1-like family protein; KEGG: cpi:Cpin_0714 2.7e-41 peptidase C1B bleomycin hydrolase; K01372 bleomycin hydrolase; Psort location: Cytoplasmic, score: 8.96.
       0.405
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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