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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80110.1DNA-binding helix-turn-helix protein; KEGG: cly:Celly_2903 1.9e-06 phage repressor like transcriptional regulator, XRE family; K01356 repressor LexA. (70 aa)    
Predicted Functional Partners:
KXB80112.1
DNA-damage-inducible protein D; Psort location: Cytoplasmic, score: 8.96.
       0.774
KXB80111.1
Hypothetical protein.
       0.773
KXB77494.1
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 1.3e-17 fadD; long-chain-fatty-acid--CoA ligase K03743; Psort location: Cytoplasmic, score: 8.96; Belongs to the CinA family.
    
 0.585
KXB80113.1
KEGG: abu:Abu_1481 3.9e-72 DNA (cytosine-5-)-methyltransferase K00558; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
    
  0.578
KXB80114.1
Hypothetical protein; KEGG: spa:M6_Spy1159 3.5e-24 Type II restriction-modification system restriction subunit; Psort location: Cytoplasmic, score: 8.96.
       0.543
KXB80109.1
Hypothetical protein.
       0.532
KXB80115.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.503
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.495
KXB78030.1
Pyruvate synthase; KEGG: pdn:HMPREF9137_1524 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 8.96.
    
  0.454
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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