STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80135.1Transporter, MotA/TolQ/ExbB proton channel family protein; KEGG: apb:SAR116_2296 1.7e-10 Biopolymer transport protein K03562; Psort location: CytoplasmicMembrane, score: 10.00. (279 aa)    
Predicted Functional Partners:
KXB80133.1
Hypothetical protein.
 
 
 0.992
KXB80134.1
Hypothetical protein.
 
 
 0.992
KXB80132.1
TonB-dependent receptor; KEGG: hip:CGSHiEE_01810 2.4e-07 bcp; TonB K03832; Psort location: Periplasmic, score: 9.83.
 
 
 0.974
KXB80138.1
Hypothetical protein; KEGG: sab:SAB1245c 4.2e-10 phosphate-binding lipoprotein K02040.
 
  
 0.874
KXB79973.1
Hypothetical protein; KEGG: pfe:PSF113_4166 0.0090 exbD; protein ExbD/TolR K03559.
  
 
 0.845
KXB79974.1
Hypothetical protein.
  
 
 0.845
KXB78993.1
TonB-dependent receptor.
  
 
 0.792
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
 
 0.790
KXB80139.1
Tetratricopeptide repeat protein; KEGG: tet:TTHERM_00391570 3.9e-06 DNA polymerase family B containing protein K02350; Psort location: OuterMembrane, score: 9.52.
 
    0.733
KXB80136.1
KEGG: pmz:HMPREF0659_A5403 7.4e-149 putative aspartate transaminase; K00812 aspartate aminotransferase; Psort location: Cytoplasmic, score: 9.26.
       0.643
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.