STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB80145.1Outer membrane assembly lipoprotein YfiO. (309 aa)    
Predicted Functional Partners:
KXB78962.1
Outer membrane protein assembly complex, YaeT protein; KEGG: apb:SAR116_0511 3.2e-18 surface antigen D15 K07277; Psort location: OuterMembrane, score: 10.00.
 
 
 0.933
KXB74293.1
Outer membrane protein, OMP85 family.
 
 
 0.921
KXB80146.1
Hypothetical protein.
 
 
 
 0.920
KXB80142.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.839
KXB80152.1
Outer membrane protein, OMP85 family.
 
 
 0.826
KXB80431.1
Signal peptidase I; KEGG: pdn:HMPREF9137_0606 7.2e-222 lepB; signal peptidase I K03100; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the peptidase S26 family.
 
  
 0.801
KXB79622.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
 
  
 0.790
KXB80147.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.789
KXB78964.1
BNR/Asp-box repeat protein.
  
 
 0.781
KXB79960.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.766
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.