STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79941.1Signal peptide protein, YSIRK family; Psort location: CytoplasmicMembrane, score: 9.82. (78 aa)    
Predicted Functional Partners:
uppP
Putative undecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.849
KXB79940.1
Efflux ABC transporter, permease protein; KEGG: pva:Pvag_3009 2.2e-21 ftsX; cell division membrane protein ftsX K09811; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
       0.794
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.779
KXB79944.1
Putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.771
KXB79945.1
KEGG: pmz:HMPREF0659_A5483 4.5e-39 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950; Psort location: Cytoplasmic, score: 9.26.
       0.771
KXB77460.1
Hypothetical protein.
  
     0.640
KXB78119.1
KEGG: gfo:GFO_0239 1.2e-43 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase K01238.
  
     0.632
KXB77476.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.628
KXB78457.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.16.
  
     0.575
KXB79139.1
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.574
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.