Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB79958.1KEGG: swp:swp_3771 8.9e-34 hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99. (409 aa)    
Predicted Functional Partners:
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
    
 0.796
KXB79957.1
Hypothetical protein.
  
    0.721
KXB79956.1
Outer membrane insertion signal domain protein; Psort location: OuterMembrane, score: 9.52.
       0.708
KXB79959.1
Hypothetical protein; KEGG: pdn:HMPREF9137_0079 1.2e-299 hypothetical protein; K03770 peptidyl-prolyl cis-trans isomerase D; Psort location: OuterMembrane, score: 9.49.
       0.649
KXB79955.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.570
KXB79954.1
Hypothetical protein.
       0.457
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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