STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79963.1Cupin domain protein; KEGG: cco:CCC13826_0495 1.9e-15 5'-nucleotidase SurE. (106 aa)    
Predicted Functional Partners:
KXB78280.1
Cupin domain protein; KEGG: mhu:Mhun_2973 8.7e-05 CMP/dCMP deaminase, zinc-binding; K01485 cytosine deaminase; Psort location: Cytoplasmic, score: 8.96.
  
 0.654
KXB80272.1
RNA polymerase sigma factor RpoD family protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
 
 0.552
KXB78294.1
Sigma-70, region 4; KEGG: lru:HMPREF0538_21998 4.5e-23 rpoD; DNA-directed RNA polymerase sigma subunit RpoD K03086; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family.
    
 
 0.552
KXB77050.1
Adenylosuccinate lyase; KEGG: pdn:HMPREF9137_0243 1.2e-203 purB; adenylosuccinate lyase K01756; Psort location: Cytoplasmic, score: 9.97.
   
 0.545
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.535
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
   
    0.499
KXB79133.1
Peptidase, M24 family; KEGG: pdn:HMPREF9137_1440 2.9e-209 peptidase, M24 family K01262; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.492
KXB79964.1
KEGG: pmz:HMPREF0659_A6426 7.5e-69 thiamine diphosphokinase K00949.
       0.484
KXB79965.1
Nicotinamide mononucleotide transporter PnuC; KEGG: hip:CGSHiEE_06685 0.00011 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K03811; Psort location: CytoplasmicMembrane, score: 10.00.
       0.484
KXB79966.1
TonB-dependent receptor plug domain protein; KEGG: ccm:Ccan_21620 2.1e-05 putative Metallocarboxypeptidase D; Psort location: OuterMembrane, score: 9.49.
       0.442
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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