STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79973.1Hypothetical protein; KEGG: pfe:PSF113_4166 0.0090 exbD; protein ExbD/TolR K03559. (179 aa)    
Predicted Functional Partners:
KXB79971.1
Transporter, MotA/TolQ/ExbB proton channel family protein; KEGG: pfe:PSF113_4167 1.9e-11 exbB; protein ExbB/TolQ K03561; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.994
KXB79974.1
Hypothetical protein.
 
     0.964
KXB78993.1
TonB-dependent receptor.
 
 
 0.884
KXB79972.1
Hypothetical protein; KEGG: bba:Bd0024 0.0063 sdhC; cytochrome B subunit K00241; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.856
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
 
 0.854
KXB80135.1
Transporter, MotA/TolQ/ExbB proton channel family protein; KEGG: apb:SAR116_2296 1.7e-10 Biopolymer transport protein K03562; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.845
KXB80132.1
TonB-dependent receptor; KEGG: hip:CGSHiEE_01810 2.4e-07 bcp; TonB K03832; Psort location: Periplasmic, score: 9.83.
  
 
 0.799
KXB79016.1
Hypothetical protein.
  
     0.763
KXB79975.1
KEGG: pfe:PSF113_5648 7.4e-14 asnC family transcriptional regulator K05800; Psort location: Cytoplasmic, score: 9.97.
       0.700
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
 
 0.565
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.